3.3. NeXus Class Definitions

Definitions of NeXus classes. These are split into base_classes (low level objects), application definitions (groupings of objects for a particular technique) and contributed_definitions (proposed definitions from the community)

The complete vocabulary of terms used in NeXus NXDL files (names of groups, fields, attributes, and links) is available for download.

Base classes

NeXus base class definitions define the set of terms that might be used in an instance of that class. Consider the base classes as a set of components that are used to construct a data file.

Base class definitions are permissive rather than restrictive. While the terms defined aim to cover most possible use cases, and to codify the spelling and meaning of such terms, the class specifications cannot list all acceptable groups and fields. To be able to progress the NeXus standard, additional data (groups, fields, attributes) are acceptable in NeXus HDF5 data files.

Users are encouraged to find the best defined location in which to place their information. It is understood there is not a predefined place for all possible data.

Validation procedures should treat such additional items (not covered by a base class specification) as notes or warnings rather than errors.

Application Definitions

NeXus application definitions define the minimum set of terms that must be used in an instance of that class. Application definitions also may define terms that are optional in the NeXus data file.

As in base classes (see above), additional terms that are not described by the application definition may be added to data files that incorporate or adhere to application definitions.

Use NeXus links liberally in data files to reduce duplication of data. In application definitions involving raw data, write the raw data in the NXinstrument tree and then link to it from the location(s) defined in the relevant application definition. See figure NeXus Multi Method Hierarchy for an example.

To write a data file with an application definition, start with either a NXentry (or NXsubentry) group [1] and write the name of the application definition in the definition field. Then write data into this group according to the specifications of the application definition.

[1]

For data files involving just an application definition, use the NXentry group. Such as this structure:

entry:NXentry
   definition="NXsas"

For files that describe multi-modal data and require use of two or more application definitions (such as NXsas and NXcanSAS), you must place each application definition in a NXsubentry of the NXentry group. Such as this structure:

entry:NXentry
   raw:NXsubentry
      definition="NXsas"
   reduced:NXsubentry
      definition="NXcanSAS"
   fluo:NXsubentry
      definition="NXfluo"

If you anticipate your data file will eventually require an additional application definition, you should start with each application definition in a NXsubentry group.

Contributed Definitions

NXDL files in the NeXus contributed definitions include propositions from the community for NeXus base classes or application definitions, as well as other NXDL files for long-term archival by NeXus. Consider the contributed definitions as either in incubation or a special case not for general use.

3.3.4. Downloads

See this table for the different formats available:

download file	description
/_static/nxdl_vocabulary.html	Human-readable HTML list of anchors, by vocabulary term, with links to the manual.
/_static/nxdl_vocabulary.json	vocabulary list by key in JSON format [2]
/_static/nxdl_vocabulary.txt	list of all anchors, sorted alphabetically
/_static/nxdl_vocabulary.yml	vocabulary list by key in YAML format [3]

[2]

JSON: https://www.w3schools.com/whatis/whatis_json.asp

[3]

YAML https://yaml.org